Publications
Articles, Posters and Talks (in chronological order)
2022
2 - Akbarzadeh, Saeed, Roozbeh Farhoodi, Tianchan Lyu, Muhammad Awais, Xian Zhao, Saadullah Farooq Abbasi, and Wei Chen. “Predicting Feeding Conditions of Premature InfantsThrough Non-Nutritive Sucking Skills Using a Sensitized Pacifier” IEEE Transactions on Biomedical Engineering
2021
1 - Geometry of Neuron Morphologies, University of California San Francisco (UCSF), May 2021
2 - Khashayar Filom* , Konrad Kording and Roozbeh Farhoodi, “On PDE Characterization of Smooth Hierarchical Functions Computed by Neural Networks.” arXiv:2005.08859.
2020
4 - Roozbeh Farhoodi*, Eva L. Dyer, Julian Yarkony, Shaofei Wang, and Konrad P. Kording. “Reconstructing the morphology of neurons from sparse noisy observations.”
3 - The Dendrograms of Neuron Morphologies exhibit Asymmetrical Motifs, Neuromatch Conference 3.0, October 2020 YouTube.
2 - Akbarzadeh, Saeed, Roozbeh Farhoodi, Tianchan Lyu, Muhammad Awais, Xian Zhao, Saadullah Farooq Abbasi, and Wei Chen. “Evaluation of Apgar Scores and Non-Nutritive Sucking Skills in Infants Using a Novel Sensitized Non-Nutritive Sucking System.” In 2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), pp. 4282-4285. IEEE, 2020.
1 - Khashayar Filom* , Konrad Kording and Roozbeh Farhoodi, “PDE constraints on smooth hierarchical functions computed by neural networks.” arXiv:2005.08859.
2019
4 - Samantha Ing-Esteves* , Roozbeh Farhoodi, and Julie L. Lefebvre, “Representing neural reconstructions as cyclic graphs allows investigation of contact-dependent models of dendrite self-avoidance”, Canadian Association for Neuroscience (CAN), Toronto, Canada.
3 - Roozbeh Farhoodi* , Khashayar Filom* , Ilenna Jones and Konrad Kording, “On Functions Implemented in Trees”, The Science of Deep Learning, Washington D.C., poster
2 - Samantha Ing-Esteves* , Roozbeh Farhoodi, and Julie L. Lefebvre, “4D analysis using cycling graph reconstructions to investigate dendrite self-recognition and self-avoidance”, Computational and Systems Neuroscience (Cosyne), Cascais, Portugal , poster
1 - Joshua Glaser* , Ari Benjamin* , Roozbeh Farhoodi* and Konrad Kording, “The Roles of Supervised Machine Learning in Systems Neuroscience”, Progress in Neurobiology, paper
2018
3 - Roozbeh Farhoodi* , Benjamin Lansdell* , Konrad P. Kording, “Quantifying the effect of staining methods on extracted neuron morphology”, Neuro Informatics (INCF), poster
2 - Roozbeh Farhoodi* , David Rolnick* and Konrad P. Kording, “Neuron dendrograms uncover asymmetrical motifs”, Computational and Systems Neuroscience (Cosyne), Denver, USA, poster
1 - Roozbeh Farhoodi* and Konrad P. Kording, “Sampling Neuron Morphology”, Biorxiv, paper
2017
3 - Konrad P. Kording* , Ari S. Benjamin, Roozbeh Farhoodi and Joshua Glaser, “The Roles of Machine Learning in Biomedical Science”, Frontiers of Engineering: Reports on Leading-Edge Engineering from the 2017, pp. 61-71 paper
2 - Roozbeh Farhoodi, “Classification and Generating of neuron Morphologies”, Invited talk at Janelia Research Campus, Ashburn, USA.
1 - Roozbeh Farhoodi* , Pavan Ramkumar and Konrad P. Kording, “Deep learning approach towards generating neuronal morphology”, Computational and Systems Neuroscience (Cosyne), Salt Lake City, USA, poster
2016
1 - Roozbeh Farhoodi* and Konrad P. Kording, “Electrical imaging from high density neural recordings”, Society for Neuroscience (SfN), San Diego, USA.
In Farsi
8 - Roozbeh Farhoodi, “Ten Simple Rules for Structuring Papers”, Translated to Farsi from here, unpublished, 2018 (pdf)
7 - Roozbeh Farhoodi, “A Geometrical Proof for a Limit Theorem in Probability”, Sharif Math Magazine, No.7 (2015), pp 61-65 (pdf)
6 - Roozbeh Farhoodi, “Introduction to Neuroscience”, Sharif Math Magazine, No.5 (2014), pp. 41-45, (pdf)
5 - Roozbeh Farhoodi and Erfan Salavati, “Interview with first female winner of fields medal; Maryam Mirzakhani”, unpublished, 2014 (pdf)
4 - Roozbeh Farhoodi and A.B.Abbasian, , “Three Examples of Applying Mathematics in Biology”, IPM Newsletter, No.69 (2013), pp. 3-6 (pdf)
3 - Roozbeh Farhoodi, “Mathematics of Sandpile Model”, journal of Iranian mathematics Olympiad (Pargar) (2013), pp. 12-24 (pdf)
2 - Roozbeh Farhoodi, “Graduate Study in Iran, Discussion with Prof.Mehrdad Shahshahani”, Sharif Math Magazine, No.4 (2012), pp. 43-54 (pdf)
1 - Roozbeh farhoodi, “Hammersly Model and Largest Increasing Subsequence in a Random Permutation”, Master thesis, Mathematics Department, Sharif University of technology (2010) (pdf)